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<?xml version="1.0"?>
<api>
  <compare fromrevid="1" torevid="2" xml:space="preserve">&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td class='diff-deletedline'&gt;&lt;div&gt;&amp;lt;big&amp;gt;'''&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;MediaWiki has been successfully installed.&lt;/del&gt;'''&amp;lt;/big&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&amp;lt;big&amp;gt;'''&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;Influenza Application Ontology Home Page&lt;/ins&gt;'''&amp;lt;/big&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-context'&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-context'&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td class='diff-deletedline'&gt;&lt;div&gt;&lt;del class=&quot;diffchange&quot;&gt;Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.&lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-context'&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-context'&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td class='diff-deletedline'&gt;&lt;div&gt;== &lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Getting started &lt;/del&gt;==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;== &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;History &lt;/ins&gt;==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*This project had it's beginnings with the purpose to develop an Influenza Infectious Disease Ontology (I-IDO), as part of the [http://www.infectiousdiseaseontology.org/Home.html IDO] (Infectious Disease Ontology) family of ontologies. The IDO ontologies are a set of interoperable ontologies that together provide coverage of the infectious disease domain. &lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*The Influenza Application Ontology has developed and grown as part of this project into a fuller and richer ontology, extensible for any virus sequence and surveillance collection project which encompasses the core IDO biomedical and clinical aspects of infectious diseases for influenza.&amp;#160; &lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-context'&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-context'&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td class='diff-deletedline'&gt;&lt;div&gt;* [http://&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;www&lt;/del&gt;.&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;mediawiki&lt;/del&gt;.&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;org&lt;/del&gt;/&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;wiki&lt;/del&gt;/&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Manual&lt;/del&gt;:&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Configuration_settings Configuration settings list&lt;/del&gt;]&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;==Consortium Members==&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td class='diff-deletedline'&gt;&lt;div&gt;* [http://&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;www&lt;/del&gt;.&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;mediawiki&lt;/del&gt;.&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;org&lt;/del&gt;/&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;wiki&lt;/del&gt;/&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;Manual&lt;/del&gt;:&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;FAQ MediaWiki FAQ&lt;/del&gt;]&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*A collaborative group of influenza researchers have established an influenza application ontology.&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td class='diff-deletedline'&gt;&lt;div&gt;* [http://&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;lists&lt;/del&gt;.&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;wikimedia&lt;/del&gt;.&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;org&lt;/del&gt;/&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;mailman&lt;/del&gt;/&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;listinfo&lt;/del&gt;/&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;mediawiki&lt;/del&gt;-&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;announce MediaWiki release mailing list&lt;/del&gt;]&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*Working together Joanne Luciano (MITRE), Lynn Schriml (University of Maryland, School of Medicine), Burke Squires (University of Texas Southwestern Medical Center&amp;#160; (UTSW)) and Richard Scheuermann (UTSW) have consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases,&amp;#160; the Centers for Excellence in Influenza Research and Surveillance (CEIRS) with the help of Eric Bortz (Mount Sinai School of Medicine) and Torsten Staab (Los Alamos National Laboratory), and the Gemina and Influenza Virus Genome Projects.&amp;#160; &lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;==Project Goal==&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*The immediate goal of I-IDO is to apply the Influenza Infectious Disease Ontology to data collected as part of the CEIRS projects in an effort to enable influenza researchers to more easily elucidate the causes of influenza virulence and pathogenesis.&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt; &lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;==Links==&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*Curation Files&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*&lt;/ins&gt;*[http://&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;docs&lt;/ins&gt;.&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;google&lt;/ins&gt;.&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;com&lt;/ins&gt;/&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;Doc?id=dgp2p9fd_0dfrnshd4&amp;amp;pli=1 I-IDO Structure Version 2] Burke's hierarchy of terms:&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;**[http:&lt;/ins&gt;/&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;/spreadsheets.google.com/ccc?key=pvfRkQJl1OsnJh58Nmzf1Tg&amp;amp;inv=lynn.schriml@gmail.com Ontologies to Map]&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;**[http&lt;/ins&gt;:&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;//docs.google.com/#people/burkesquires%40gmail.com Influenza Ontology Google Docs Home Page&lt;/ins&gt;]&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*&lt;/ins&gt;*[http://&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;spreadsheets&lt;/ins&gt;.&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;google&lt;/ins&gt;.&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;com&lt;/ins&gt;/&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;ccc?key=pcKtQNrJvmRiyx-T29fA_TQ&amp;amp;hl=en flu ontology 28]: This is our overview working document, found in google docs&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;&amp;#160;  &lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;**[http:&lt;/ins&gt;/&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;/spreadsheets.google.com/ccc?key=pcKtQNrJvmRg5PSubPUqOdg&amp;amp;inv=lynn.schriml%40gmail.com&amp;amp;t=525179600742449631 I-IDO V3 Ontology Matching]&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*** Burke created the spreadsheet we are now using to put definitions onto the spread sheet to map terms from Burke's hierarchy fournd on (1 &lt;/ins&gt;: &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;I-IDO V2)&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;**[http://spreadsheets.google.com/ccc?key=pvfRkQJl1OskeHzFmmUaiQA&amp;amp;inv=lynn.schriml%40gmail.com&amp;amp;t=3725831644864612901&amp;#160; Team Members Definition Assignments&lt;/ins&gt;]&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;: Joanne's definition spread sheet, with our three worksheets, splitting up the terms to define&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;&amp;#160; &amp;#160; &amp;#160; &lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;*&lt;/ins&gt;*[http://&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;influenza-ontology&lt;/ins&gt;.&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;googlegroups&lt;/ins&gt;.&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;com&lt;/ins&gt;/&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;web/MSSM%20Pilot%20project%20data%20mapping.xls?gda=hx1Gq1QAAADCAyaeQDRoTcvhEI7zWNXvm0Lg6am5weqzdWIHVTC5fmG1qiJ7UbTIup-M2XPURDT6lhHJIpl9SO2iiV6hQZagW-CkPC9xMtCyRv0uZTHkrKmGjL_aT2pnt3gzCHCrqco CEIRS Pilot Project Mapping Data]:MSSM Pilot project data mapping.xls&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;&amp;#160; &amp;#160;  &lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td class='diff-addedline'&gt;&lt;div&gt;&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;**[http://groups.google.com&lt;/ins&gt;/&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;group&lt;/ins&gt;/&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;influenza&lt;/ins&gt;-&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;ontology Influenza Google Groups&lt;/ins&gt;]&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
</compare>
</api>