Development Notes

Development Notes Other Ontologies:

IDO Disease GAZ Envo Sequence Ontology FMA - Anatomy (Human) only human PATO CARO (Common Anatomy Reference Ontology)

What is our target date of release of the draft ontology OBO version? Draft for DB design - Jan 25 March 1 - Draft for OBO version Face to Face meeting Where and When - Checking on Feb. 18, 19 with Lynn hosting (beer rounds!) Changes to the spreadsheet: Added Root (top node), one up node (super class), relationships and source ontology (in process), a. What is the quickest way to get into OBO It has to meet the OBO criteria Meetings: a. OWL-ED: Submission Due Feb 15th http://spreadsheets.google.com/ccc?key=pfNbqHlKIIKFJfv5K1_XsUA&inv=jluciano@mitre.org&t=8417230047605897764&guest

Action Items

All:

Review Relation Ontology Paper: On line version: http://genomebiology.com/2005/6/5/R46 PDF version: http://genomebiology.com/content/pdf/gb-2005-6-5-r46.pdf Nigham Shah and Barry Smith: Biomedical Ontologies, How to make use of them Power Point Presentation from ISMB 2007 http://www.bioontology.org/wiki/images/0/00/ISMB_2007_Final.ppt Lynn:

Action Item: FMA now in OBO,ACARO - model generic ontology Find steps to submit and publish draft Identify how to submit ontology to OBO

Burke:

Initial QA check - can virulence related data (with fields) be extracted (BFO) Restrict to minimal info - designated on one experiment - quality check Data-Schema that will be coded into Oracle / UML Diagram

Joanne:

Review draft with Marc Create Obo file for ontology Schedule next meeting for Monday 1-3PM EST