Difference between revisions of "Main Page"
From Influenza Ontology Wiki
(→Links) |
|||
| Line 15: | Line 15: | ||
==Links== | ==Links== | ||
| + | |||
| + | ===Internal Project Links=== | ||
*Curation Files | *Curation Files | ||
| − | **[http://docs.google.com/Doc?id=dgp2p9fd_0dfrnshd4&pli=1 I-IDO Structure Version 2] | + | **Burke's hierarchy of terms: [http://docs.google.com/Doc?id=dgp2p9fd_0dfrnshd4&pli=1 I-IDO Structure Version 2] |
| − | + | ||
**[http://spreadsheets.google.com/ccc?key=pvfRkQJl1OsnJh58Nmzf1Tg&inv=lynn.schriml@gmail.com Ontologies to Map] | **[http://spreadsheets.google.com/ccc?key=pvfRkQJl1OsnJh58Nmzf1Tg&inv=lynn.schriml@gmail.com Ontologies to Map] | ||
| − | |||
**[http://docs.google.com/#people/burkesquires%40gmail.com Influenza Ontology Google Docs Home Page] | **[http://docs.google.com/#people/burkesquires%40gmail.com Influenza Ontology Google Docs Home Page] | ||
| − | + | **This is our overview working document, found in google docs: [http://spreadsheets.google.com/ccc?key=pcKtQNrJvmRiyx-T29fA_TQ&hl=en flu ontology 28]: | |
| − | **[http://spreadsheets.google.com/ccc?key=pcKtQNrJvmRiyx-T29fA_TQ&hl=en flu ontology 28]: | + | |
| − | + | ||
**[http://spreadsheets.google.com/ccc?key=pcKtQNrJvmRg5PSubPUqOdg&inv=lynn.schriml%40gmail.com&t=525179600742449631 I-IDO V3 Ontology Matching] | **[http://spreadsheets.google.com/ccc?key=pcKtQNrJvmRg5PSubPUqOdg&inv=lynn.schriml%40gmail.com&t=525179600742449631 I-IDO V3 Ontology Matching] | ||
| − | *** | + | *** Spreadsheet we are now using to map terms from Burke's hierarchy, found on (1 : I-IDO V2) |
| + | **[http://spreadsheets.google.com/ccc?key=pvfRkQJl1OskeHzFmmUaiQA&inv=lynn.schriml%40gmail.com&t=3725831644864612901 Team Members Definition Assignments]: Joanne's definition spread sheet, with our three worksheets, splitting up the terms to define | ||
| − | + | ===External Links=== | |
| − | + | **[http://influenza-ontology.googlegroups.com/web/MSSM%20Pilot%20project%20data%20mapping.xls?gda=hx1Gq1QAAADCAyaeQDRoTcvhEI7zWNXvm0Lg6am5weqzdWIHVTC5fmG1qiJ7UbTIup-M2XPURDT6lhHJIpl9SO2iiV6hQZagW-CkPC9xMtCyRv0uZTHkrKmGjL_aT2pnt3gzCHCrqco CEIRS Pilot Project Mapping Data] | |
| − | **[http://influenza-ontology.googlegroups.com/web/MSSM%20Pilot%20project%20data%20mapping.xls?gda=hx1Gq1QAAADCAyaeQDRoTcvhEI7zWNXvm0Lg6am5weqzdWIHVTC5fmG1qiJ7UbTIup-M2XPURDT6lhHJIpl9SO2iiV6hQZagW-CkPC9xMtCyRv0uZTHkrKmGjL_aT2pnt3gzCHCrqco CEIRS Pilot Project Mapping Data] | + | |
| − | + | ||
**[http://groups.google.com/group/influenza-ontology Influenza Google Groups] | **[http://groups.google.com/group/influenza-ontology Influenza Google Groups] | ||
| + | **[http://obi.svn.sourceforge.net/viewvc/*checkout*/obi/trunk/docs/user/obi-lsw-report.html?revision=535 HTML Version of OBI] | ||
| + | **[http://www.ebi.ac.uk/ontology-lookup/ontologyList.do] EBI’s Ontology Lookup Service (list of browsable ontologies)] | ||
| + | **[http://www.ebi.ac.uk/ontology-lookup/ EBI’s Ontology Lookup Service Search Box] | ||
| + | **[https://wiki.cbil.upenn.edu/obiwiki/index.php/HomePage OBI’s Wiki] | ||
| + | ***[https://wiki.cbil.upenn.edu/obiwiki/index.php/DigitalEntityTerms OBI’s Wiki: Digital Entity Terms (information entity)] | ||
| + | **[http://groups.google.com/group/obi-biomaterial OBI’s Google Groups page] | ||
| + | ***Has listservs for various topics like | ||
| + | ****[http://groups.google.com/group/obi-denrie-branch obi-denrie-branch] - List to discuss terms in the ontology of digital_entity/non-realizable_info_entity branch such as digital document, data set... | ||
| + | ****[https://lists.sourceforge.net/lists/listinfo/obi-role-branch obi-role-branch] - List to discuss terms in the ontology of roles such as Principle investigator, Patient, Reagent... | ||
| + | ****[https://lists.sourceforge.net/lists/listinfo/obi-instrument-branch obi-instrument-branch] - List to discuss terms in the ontology of instrument branch such as microarray, flow cytometer... | ||
| + | ****[https://lists.sourceforge.net/lists/listinfo/obi-relations obi-relations] - List to discuss terms in the ontology of relations branch such as is_manufactured_by, has_function... | ||
| + | **[http://sourceforge.net/tracker/?group_id=177891&atid=886178 OBI Sourceforge Issue Tracker] | ||
| + | **[http://obofoundry.org/wiki/index.php/Naming OBO Foundry's wiki on naming conventions] | ||
Revision as of 19:45, 1 July 2008
Influenza Application Ontology Home Page
Contents
History
- This project had it's beginnings with the purpose to develop an Influenza Infectious Disease Ontology (I-IDO), as part of the IDO (Infectious Disease Ontology) family of ontologies. The IDO ontologies are a set of interoperable ontologies that together provide coverage of the infectious disease domain.
- The Influenza Application Ontology has developed and grown as part of this project into a fuller and richer ontology, extensible for any virus sequence and surveillance collection project which encompasses the core IDO biomedical and clinical aspects of infectious diseases for influenza.
Consortium Members
- A collaborative group of influenza researchers have established an influenza application ontology.
- Working together Joanne Luciano (MITRE), Lynn Schriml (University of Maryland, School of Medicine), Burke Squires (University of Texas Southwestern Medical Center (UTSW)) and Richard Scheuermann (UTSW) have consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS) with the help of Eric Bortz (Mount Sinai School of Medicine) and Torsten Staab (Los Alamos National Laboratory), and the Gemina and Influenza Virus Genome Projects.
Project Goal
- The immediate goal of I-IDO is to apply the Influenza Infectious Disease Ontology to data collected as part of the CEIRS projects in an effort to enable influenza researchers to more easily elucidate the causes of influenza virulence and pathogenesis.
Links
Internal Project Links
- Curation Files
- Burke's hierarchy of terms: I-IDO Structure Version 2
- Ontologies to Map
- Influenza Ontology Google Docs Home Page
- This is our overview working document, found in google docs: flu ontology 28:
- I-IDO V3 Ontology Matching
- Spreadsheet we are now using to map terms from Burke's hierarchy, found on (1 : I-IDO V2)
- Team Members Definition Assignments: Joanne's definition spread sheet, with our three worksheets, splitting up the terms to define
External Links
- CEIRS Pilot Project Mapping Data
- Influenza Google Groups
- HTML Version of OBI
- [1] EBI’s Ontology Lookup Service (list of browsable ontologies)]
- EBI’s Ontology Lookup Service Search Box
- OBI’s Wiki
- OBI’s Google Groups page
- Has listservs for various topics like
- obi-denrie-branch - List to discuss terms in the ontology of digital_entity/non-realizable_info_entity branch such as digital document, data set...
- obi-role-branch - List to discuss terms in the ontology of roles such as Principle investigator, Patient, Reagent...
- obi-instrument-branch - List to discuss terms in the ontology of instrument branch such as microarray, flow cytometer...
- obi-relations - List to discuss terms in the ontology of relations branch such as is_manufactured_by, has_function...
- Has listservs for various topics like
- OBI Sourceforge Issue Tracker
- OBO Foundry's wiki on naming conventions
